CSE 527 Computational Biology

Possible project topics

Examples of project topics include:

• Network-based analysis of subtypes of cancer and relationship with drug sensitivity.

• Reconstructing regulatory networks specific to tissue types or regions in human brain.

• Understanding the evolutionary change of transcriptional regulatory netowkrs in yeast.

• Identifying causal sequence variations for related phenotypes.

• Detecting genetic interaction from genome-wide association studies data

• Detecting epistasis from microarray gene expression data.