| Course Info |
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CSE 590C is a weekly seminar on Readings and Research in Computational Biology, open to all
graduate students in computational, biological, and mathematical sciences.
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| Papers, etc. |
 Note on Electronic Access to Journals
The UW Library is generally a paid subscriber to non-open-access journals we cite. You can freely access these
articles from on-campus computers. For off-campus access, follow the "[offcampus]" links below or look at the
library "proxy server" instructions. You will be
prompted for your UW net ID and password.
10/05: -- ---- Organizational Meeting ----
10/12: Synthetic Evolution -- Jason; Thachuk
10/19: Single-Cell Dropout -- Ayse; Ruzzo
10/26: TFBS Syntax -- Joe; Mostafavi
11/02: TAPE -- Nicasia, Pascal; S. Wang
- Rao, R., Bhattacharya, N., Thomas, N., Duan, Y., Chen, P., Canny, J., ... & Song, Y. (2019).
Evaluating protein transfer learning with TAPE. In Advances in Neural Information Processing Systems (pp. 9689-9701).
http://papers.nips.cc/paper/9163-evaluating-protein-transfer-learning-with-tape.pdf [offcampus]
11/09: -- No Class; planned presentation postponed to 11/23
11/16: RNA Evolution -- Addie; Ruzzo
- MB Walter Costa, C Höner Zu Siederdissen, M Dunjić, PF Stadler, K Nowick, "SSS-test: a novel test for detecting positive selection on RNA secondary structure." BMC Bioinformatics, 20, #1 (2019) 151.
11/23: Network Propagation -- Alyssa; Y. Wang
11/30: -- No Class
12/07: -- No Class
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| Other Papers |
Other suggested topics/papers that didn't fit the schedule:
- Larry suggested
- A Nellore, AE Jaffe, JP Fortin, J Alquicira-Hernández, L Collado-Torres, S Wang, RA Phillips, N Karbhari, KD Hansen, B Langmead, JT Leek, "Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive." Genome Biol, 17, #1 (2016) 266.
[offcampus]
- Bill suggested
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