I had 500 hits for the three proteins I choose, with an e cut off of .0001. I used Baobab to trim down a Phylip tree produced by DIALIGN, so that I would have closely related proteins.
CLUSTAL: No suprisingly conserved motifs
DIALIGN: No suprisingly conserved motifs
| 5106285 | Aeropyrum pernix K1 complete genome - 0..1669695 |
1639285..1640286 - 333 5106285 APE2579 - Q COG1131 333aa long hypothetical ABC transporter ATP-binding protein |
| 10176604 | Bacillus halodurans C-125 |
4118851..4119624 - 257 10176604 BH3979 - Q COG1131 ABC transporter (ATP-binding protein) |
| 16413437 | Listeria innocua Clip11262 |
1001906..1002670 + 254 16413437 lin0978 - - - similar to daunorubicin resistance ATP-binding proteins |
| 16410381 | Listeria monocytogenes strain EGD |
1010313..1011077 + 254 16410381 lmo0979 - - - similar to daunorubicin resistance ATP-binding proteins |
| 18159232 | Pyrobaculum aerophilum strain IM2 complete genome - 0..2222430 |
148392..149345 + 317 18159232 - PAE0269 - - ABC-2 type transport system ATP-binding protein |
| 10129760 | Streptomyces coelicolor A3(2) |
4773118..4774128 + 336 10129760 SCD19.14 SCO4359 - - putative ABC transport system ATP-binding protein |
| 20520964 | Streptomyces coelicolor A3(2) |
5398064..5399071 + 335 20520964 2SCK31.23 SCO4963 - - putative ABC transporter ATP-binding protein |
| 4808357 | Streptomyces coelicolor A3(2) |
3783682..3784629 - 315 4808357 SCE9.25c SCO3418 - - putative ABC transporter ATP-binding component |
| 5457259 | Streptomyces coelicolor A3(2) |
4205224..4206252 + 342 5457259 SCGD3.25 SCO3824 - - putative ABC-transporter ATP-binding component |
| 5531429 | Streptomyces coelicolor A3(2) |
1839862..1840860 + 332 5531429 SCI11.08 SCO1719 - - putative ABC-transporter ATP-binding protein |
| 6469242 | Streptomyces coelicolor A3(2) |
2424293..2425390 + 365 6469242 SCC75A.03 SCO2257 - - probable ABC transporter, ATP-binding component. |
clustalw
gi|5531429|emb|CAB50934.1| --------------------------------------------------------------------------------------------------------------CGT-CGGAGACGACGGGTC-CGCA----CGGCTCGGCGTACG----GTCTGGCGTA-CGACGGGGCGGCCCTGCT-----------------------------------------------------------------------------------------dialign
gi|5457259|emb|CAB46947.1| --------------------------------------------------------------------------CGTCGGCCACGAGCAGC---GAGAACAAGGAACTCTCCC-CGGTCAGCACCAGTCGCTGG----CGGCCCTGCTGGTG----ACCAGGGAGC-GGCCGCCGCGGCCCAGCGCCCTGTCCACGTCCCTGACCTTCGGCTGGCGCGCGATCCTCAAGA--------------------------------------------
gi|20520964|emb|CAC21637.3| -----------------------------------------------------------------------------------CAGGCGCC---TCCGACGCCGCGCCGGTCA-CGCG-TCCGCCAACCCCATC--GGCCAGTCCGTCCGTG----ACTCGCTGGT-CATCGC-CCGCCGAAACCTGATCCGGATGACCCGGATCCCGGAGATGGTCCTGTTCGGGATCATCCAGCCGGTGATGTTCGTCATCCTGT-----------------
gi|10129760|emb|CAC08315.1| -----------------------------------------------------------------------------------CGGCCCACG-GTTCGTCAGCGCGCCGGGCC-CGG----CGCCGGTCCCGTCCGAGCGCGGCCGCCTCT-----ACTGGCTGCT-CGCCGA-CTGCGGCAACATCGTCCGC---------------------------------------------------------------------------------
gi|6469242|emb|CAB61703.1| --------------------------------------------------------------------------CGGCCGCCTCGAACGCC---CCCGACACCCTGACCACCC-CGG--CGCGCGGATCACCCC---GCGCGCCCACCTCCG----GCACACCAGCGCGCTGATCCGCCGCAACCTGCTGTGGATCCGGCAGGACCC-------------------------------------------------------------------
gi|4808357|emb|CAB42771.1| -----------------------------------------------------------------------------------CGGCTGCC---GTCCCCAGCGGGCCAGCTC-GCG-----GCGGGTCATGGT---CCAGGGTCGGTCAGG----GCGTAC--AT-CGCCGGGCTCGTGCTTCCCGTGC------------------------------------------------------------------------------------
gi|10176604|dbj|BAB07698.1| AGCGTTTGATGGGCTCGTAATGAACCGCGCCATCAGTCCGCTCTTAACATCATTAAACAGTCGCAAGGACGTGTAAGCGACACCGGATGCGATAGCCATCAGCAAGATCCCTGGCAATAAATAATTGACGTAATTGTTCGTACCTGTCTCTATGGCGCCGCCAAATACATAGACAAACAGCAGCATCATCATAATCGGTGTGACCGCGACCGTGACAATTGTATCCGGGCTGCGCATGATGTTACGCATTAATCGCCCTAGTAATACCCCTGTT
gi|16413437|emb|CAC96209.1| -------------------------------------------------TACGAAATCCGATACAAGAATCTTGTTTGGTCGCTCGATGCGTCACATTTTGCGTAGTCCAGATACAATTATTACAGTAGCAATTATACCCATTATGATTATGT---TGATGTTCGTCTATGTACTAGGTGGAGCGATTCAAACAGG-AACAGATAATTATGTTGATTACTTGTTACCAGGGATTATTTTAATGGCAA---------------------------
gi|16410381|emb|CAC99057.1| -------------------------------------------------TAGCCATCGTGATACAAGTATATTATTTGGTCGCTCCATGCGTCATATTATGCGTAGTCCTGATACGATTATTACTGTTGCTATTATTCCAATTATGATTATGT---TGATGTTTGTGTATGTGCTTGGAGGTGCAATTCAAACAGG-GACAGACAATTACGTAGATTACTTGTTGCCGGGTATTATTTTGATGGCAATT-------------------------
gi|18159232|gb|AAL62671.1| --------------------------------------------------------------------------------------------AGTCCCTGACATACGCCTTGTACAA-----ACGGGAGGTTTGAAGCTGTTTAGGAGTAAGT---ACATGTG-GCTCATGTTAGTAGCCCAGCCGTTG-------------------------------------------------------------------------------------
gi|5106285|dbj|BAA81596.1| ------------------------------------------------------------------GGATTTAGACTGGATCGCTTGTTTGGACGAGGTTGTACAGGT-TGAAGCTCTT--CCCGAAAAGGGCTATCCAGAAGATGGGTGTGA---TTATGCT-GACTAGGAGGACCGACCTCCGATTAACCCACTTGATTATTTCCCTCTTCGTTAGGATGAGGGTGGATACGATGATCTCCGCCATT-------------------------
gi|6469242|e ---------------CG-----------GCCGCC--TCGA-CCGACACCCTGACCAC---C-C-CG--------------GCGCGCGGATCACCCCGCGCG-----CCCACCTCCGGCACCAGCGCGCTGATCCGCCGCAACCTGCTGTGGA------------------TCCGGCAGG--ACCC-------------------------------------------------------------------------------------
gi|5531429|e -----------------------------------------GAGACGACGGGTCCGC---A-C-GGCTCGGC--GTACGG---------------GCGTAC-----GACGGGGC----------------------------------------------------------------G--GCCCT--------------------------------------------------------------------------GCt-------
gi|16413437| ta-----------------------------------CGATCCGATACAAGAATCTT---GTTTGG--------------TCGCTCGATGCGTCACATTTT-----GCGTAGTCCAGATAAGTAGCAATTATACCCATTATGATTATGTTGATGTTCGTCGTGGAGCGATTCAAACAGG--AACAGATAATTATGTTGAT--------------------------------ACTTGTTA-------GATTATTTTAATGGCAA------
gi|18159232| a---------------G-----------TCCC--------ACATACGCCTTGTACAA---A-C-GG--------------GAGg------------------------------------TTTGAAGCTGTTTAGGAGTAAGTACATGTGGC------------------TCATGTTAGtaGCCCA--------------------------------------------------------------------------GCCGTTG---
gi|4808357|e --------------------------------------------------CGGCTGC---C-G-TCCCCAGC--GGGC---------------CAGCTCGC-----GGCGGGTCATGGTC-G--------GTCAGGGCGTACATCG---CCGGGCTCGTG----------------------CCCG--------------------------------------------------------TGc-------------------------
gi|20520964| ---------------CA-----------GGCGCC--TCCGGCCGGTCACGCGTCCGC---C-A-ACCCCATC--GGCCAGTGACTCGCTG-GTCATCGCCC-----GCCGAAACCTGATCGG--------ATCCCGGAGATGGTCCTGTTCGGGATCATC----------------------CCGG--------------------------------------------------------TGATGTT----------CGTCAT-----
gi|10176604| aGCGTTTGATGGGCTCGtaatgaaCCGCGCCATCAGTCCGCATTAAACAGT---CGC---AaG-GACGTGT----------------AAGCGACACCGGAT-----GCGATAGCCATCAG---CCTGGCAAT----------AAATAATTGACGTAATTG----------TCTCTATGG--CGCCGCCAAATACATAGAcatcatcataatcggtgtgaccgcgaccgtgacAATTGTATcaTGATGTTACGCATTAATCGCCCTAGtaa
gi|10129760| ---------------CG-----------GCCCACGGTTCGGCCGGGCCCGG---CGC---C-G-GTCCCGTCcgAGCGCGCTACTGGCTG-CTCGCCGACT-----GCGGCAACATCGTC--------------------------------------------------------------C---------------------------------------------------------------------------------------
gi|16410381| t---------------A-----------GCCATCG-------TGATACAAGTATATT---ATTTGG--------------TCGCTCCATGCGTCATATTAT-----GCGTAGTCCTGATATGTTGCTATTATTCCAATTATGATTATGTTGATGTTTGTGGAGGTGCAATTCAAACAGG--GACAGACAATTACGTAGAT--------------------------------ACTTGTTG-------TATTATTTTGATGGCAATT----
gi|5106285|d gGATTTAGACTGGATCGcttgttt----GGACGAGGTTGTGAAG----------CTC---T-T-CCCGAAAA--GGGCTAGGGTGTGATTATGCTGACTAGgaggaCCGACCTCCGATTACCACTTGATTATTTCCCTCTTCGTTA---GGATGAGGGTG----------------------ACGA--------------------------------------------------------TGATCTC----------CGCCATT----
gi|5457259|e c------GTCGGCCACGag-----CAGCGAGAACAAGGAATCAGCACCAGT---CGCtggC-G-GCCCTGC----------------TGGTGAC-CAGGGA-----GCGGCCGCCGCGGC---CCTGTCCACGTCCCTGACCTTCG---GCTGGCGCGCG----------------------CTCA--------------------------------------------------------AGA-------------------------
0000000000 000000001111110011110233321111111111111000000000000011111111
There are some possible motif's identified by both programs. In particular, Dialign has produced one that looks well conserved (first yellow highliteing).
| 17743560 | AT plasmid complete sequence - 0..542780 |
137489..138283 + 264 17743560 attE Atu5131 - - ABC transporter, nucleotide binding/ATPase protein |
| 17743906 | AT plasmid complete sequence - 0..542780 |
443458..444117 + 219 17743906 attE Atu5452 - - ABC transporter, nucleotide binding/ATPase protein |
| 15161880 | Agrobacterium tumefaciens strain C58 plasmid AT |
137886..138680 + 264 15161880 - AGR_pAT_191 - - AGR_pAT_191p |
| 15162260 | Agrobacterium tumefaciens strain C58 plasmid AT |
443854..444513 + 219 15162260 - AGR_pAT_663 - - AGR_pAT_663p |
| 27349252 | Bradyrhizobium japonicum strain USDA110 |
1107621..1108274 - 217 27349252 - bll100 - - bll1002 |
| 13880580 | Mycobacterium tuberculosis CDC1551 |
1101842..1102588 + 249 13880580 MT1014 - - - ABC transporter, ATP-binding protein |
| 2916947 | Mycobacterium tuberculosis complete genome - 0..4411529 |
1101801..1102547 + 248 2916947 Rv0986 - R COG1136 hypothetical protein Rv0986 |
| 24985412 | Pseudomonas putida KT2440 complete genome - 0..6181863 |
4262758..4263423 - 221 24985412 - PP3735 - - - |
| 24346426 | Shewanella oneidensis MR-1 complete genome - 0..4969803 |
879890..880561 - 223 24346426 - SO0857 - - ABC transporter, ATP-binding protein |
| 9656141 | Vibrio cholerae chromosome I |
1754996..1755679 - 227 9656141 VC1630 - R COG1136 ABC transporter, ATP-binding protein |
| 27362320 | Vibrio vulnificus CMCP6 chromosome I complete sequence - 0..3281945 |
2902720..2903391 - 223 27362320 - VV12838 - - |
clustalw
gi|9656141|gb|AAF94781.1| -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGGCATGATGGTTAATG-CTGTAACGC--CCACCAATAGAGAGA-CACCGAGAGTCAAGCCAAGCCAGACCAGACAAATCTGTAATGGATAGCGACGATAATGACCCAATAGCGCC----------------------------------dialign
gi|27362320|gb|AAO11175.1|AE01 -----------------------------------------------------------------------------------------------------------------------------------TGGCGCTGTGTTTTGGGCAATGCGATATGGCAGAGGGTTATTGAAGAGTTTCTCGCCGTTTTGATAGCTTTCTTGCGCATGGTGATTGATGGCTGTGACAC--CAACCAATAAAGACA-CGCCTAACGTGAGGCCAAGCCACACCAATAATATTTGTAGCGGGTAACGTCTGTAGTGACCGAGTAGTGCC----------------------------------
gi|24346426|gb|AAN53933.1|AE01 TGCCAAGTCCCCAACTATCATCGACACGGATCACTTTAGGGTAGATGGGGCTATG-GATTGGGCTAGGCTGAGCTGGCCATTGGGGGCGATTTTACTGGCCAGACTGTCACTCATCACCACCACAGGCTCACCGCTCATTAGGGCTGCAAGGGGCAGATCTCCCATGGAGACAGCAGAATTAGCCGTTGCCTTGCTATTTGAGGATGGTGAAGTGTTTTTTGAGGTTAATGTGGCGGTCAATGCCGCGA-CAATATCGCTGCCTTCAATTTG--CCAATACTGGCCGTTTTGGCCAGCAACTCT-GCCACTGACTACCGCAAGACTTTGGCTAATCCCAGCCTGTCTTAAACTGA
gi|17743560|gb|AAL45821.1| ---------------------------TGACGACCGCTTTCCGGGCGCTGCTCT--CACACTG-------------GC-CTACAGACCGCTTCAGCTTATCACCCTCATTGTCGGCGTCACGCTCGCAACCGGCCTCTGGTGCGCCGTCCAGGCAATCAATGCCGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
gi|15161880|gb|AAK90505.1| ---------------------------TGACGACCGCTTTCCGGGCGCTGCTCT--CACACTG-------------GCGCTACAGACCGCTTCAGCTTATC-CCCTCATTGTCGGCGTCACGCTCGCAACCGGCCTCTGGTGCGCCGTCCAGGCAATCAATGCCGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
gi|17743906|gb|AAL46139.1| ---------------------------TGCCAACCGCGTTTCAGGCATTGCTTT--CGCAT-G-------------GCGCCATAGACCCCTGCAACTCTTCACGCTTTTTGTGGGAGTGGCTCTCGCGACCGCCCTTTGGTCTGCCGTGCAGGCCATCAATGCCGAAGCCCGCGCCAGTTATGACCGCGCTGCGTCAGTGTTGGCGCAAAATCAGCTCGATCAACTGGTAGCTAAGGACGGCAGCACGATTTCCTCCAACACTTATGCACGCCTCCGCCGGGCTGGCCTTGATGTGTCGCCAATCATCGAGGGTGAACACAGGTTTGGTACAACGCGCA----------------
gi|15162260|gb|AAK90827.1| ---------------------------TGCCAACCGCGTTTCAGGCATTGCTTT--CGCATTG-------------GCGCCATAGACCCCTGCAACTCT-CACGCTTTTTGTGGGAGTGGCTCTCGCGACCGCCCTTTGGTCTGCCGTGCAGGCCATCAATGCCGAAGCCCGCGCCAGTTATGACCGCGCTGCGTCAGTGTTGGCGCAAAATCAGCTCGATCAACTGGTAGCTAAGGACGGCAGCACGATTTCCTCCAACACTTATGCACGCCTCCGCCGGGCTGGCCTTGATGTGTCGCCAATCATCGAGGGTGAACACAGGTTTGGTACAACGCGCA----------------
gi|2916947|emb|CAA17585.1| -------------------------GCTACCACCCGTTGCTTATGCAC-ACTATGGCGCACGGCGTGGCGTCGGCTGCGTCAGCGGCCGTTTCAATATATTCTGCTGGTCCTGGGAATTGCGCTAGGCGTTGCCATGATCGTGGCTATCGATGTATCCAGTAATTCGGCGCAACGTGCCTTCGATCTCTCTGCCGCGGCCATCACCGGAAAATCTACTCACCGGCTGGTCAGTGGCCCCGCCGGGGTGGACCAACAGCTTTATGTCGATCTGCGCCGACACGGGTACGATTTTTCCGCTCCGGTAATCGAAGGCTATGTGTTGGCCCGCGGACTGGGAAACCGAGCTAT------
gi|13880580|gb|AAK45262.1| -------------------------GCTACCACCCGTTGCTTATGCACCACTATGGCGCACGGCGTGGCGTCGGCT-CGTCAGCGGCCGTTTCAATATATTCTGCTGGTCCTGGGAATTGCGCTAGGCGTTGCCATGATCGTGGCTATCGATGTATCCAGTAATTCGGCGCAACGTGCCTTCGATCTCTCTGCCGCGGCCATCACCGGAAAATCTACTCACCGGCTGGTCAGTGGCCCCGCCGGGGTGGACCAACAGCTTTATTTCGATCTGCGCCGACACGGGTACGATTTTTCCGCTCCGGTAATCGAAGGCTATGTGTTGGCCCGCGGACTGGGAAACCGAGCTAT------
gi|27349252|dbj|BAC46267.1| ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGGCATTGCGGGCCTGCTGGTTGATCGCCTGCACGCCGCTCCACAGCGCAGTCGC-GGCGATCACCCGATCAGAAGTGTCGCGAACTGCATCCTGTGCCGCCGCCAATGGCTCAGGAGCACCGCGAGGACCCACAGCGCGCGCC----------------------------------
gi|24985412|gb|AAN69331.1|AE01 ------------------------------------------CGCCCTTCCAGCACCGGCGAAACAGCCCAGCCCAGCTGCGCAGTTGCACGTACAACGCCTGATCGAAGCGCTCGCCATTGCGCGCGATCAGTTGCGCCTGCAACGGCCCGGTCAATACCGCGCTGGCCCGGGCATAGTCGCTGCGTGCCTGGCTGTTCAACGCCTGCACGCCGGTCCACAACGCCGTGGCCAGCCACAGGCCAGTGAAGATGCTGAAGCACTGCACACGATGGCGCCGCCAGTGGCTGAGCAGCGCCAACAGGGCCAGCGACAAAAGCTTCA-------------------------------
gi|9656141|g t-----------------------------------------------CT-----GGCATGATGGTTA-----------------------------------T----G----TA-ACGC-----------------AATAGAGAGACACC--GA-----AAgccaagCCAGACCA---------------------------------------------------------------------------------GACAA-------------------GTAATGGATag-----CGACGATAATGACCCAATAGCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
gi|27349252| ------------------------------------------------CA---TAGGCATTGCGGGCC-----------------------------------T---GGttgaTC----------------------TGCACGCCGCTCCAcaGCgcagt-A------CCCGATCA---------------------------------------------------------------------------------GAAGT------------------CGAACTGCATcctgtGCCGCCGCCAATGGCTCAGGAGCACC------ACAGCGC--------------------------------------------------------------------------------------------------------------------------------------GCGCC-----------------------------------------------
gi|17743560| TG---------------------------------------------ACG---ACCGCTTTCCGGGCG-----------------------------------T----C----TC-ACAC-----------------TACAGACCGCTTCA--GC-----AC------CCTCATTG---------------------------------------------------------------------------------TCGGC------------------CGCTC----------GCAACCGGC-----CTCTGGTGCGCA------TCAATGCCGAA---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
gi|15161880| TG---------------------------------------------ACG---ACCGCTTTCCGGGCG-----------------------------------T----C----TC-ACAC-----------------TACAGACCGCTTCA--GC------C------CCTCATTG---------------------------------------------------------------------------------TCGGC------------------CGCTC----------GCAACCGGC-----CTCTGGTGCGCA------TCAATGCCGAA---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
gi|24346426| tgccaagtcCCCAACTATCATCGACacGGATCACTTTAGGCTATGGATTGggcTAGGCTGAGCTGGCCattgggggcgat-----------------------T---GG----CC-AGAC-----------------TCATCACCACCACA--GG------C------GCTCATTAgggctgcaaggggcagatctcccaagaattagccgttgccttgctatttgaggatggtgaagtgttaatgtggcggtcaatGCCGC------------------ATATC----------GCTGCCTTCAATt-----------------------TGCCAAt--------------------------------------------------------------TGGCCGTTTTGGCCAGCAACTCtgccactGACTACC-GCA-------CTTTGGCT--------AATCCCAGCCTGTCTTA----------------------------------------
gi|2916947|e -----------------------------------------------GCT---ACCACC-------CG-----------------------------------TTATGC----AC-ACTACGTGGCGTCGGCTgCGTCAGCGGCCGTTTCA--AT-----CT------GCTGGTCC---------------------------------------------------------------------------------TGGGAATTGCGCTAGGCGTTGCCCTATC----------GATGTATCC-----AGTAATTCGGCTTCGATCTCTCTGCCGCG---GCCATCACCGGAAAATCTAGGTCAGTGGCCCCGCCGGG---------------------------------------------------GTGGA--CCA--------TTATGTC--------GATCTGCGCCGACACGGTCCGCTCCGGTAATCGAAGGCTATGTGTTGGCCCGCGGAC
gi|13880580| -----------------------------------------------GCT---ACCACC-------CG-----------------------------------TTATGC----ACcACTACGTGGCGTCGGCT-CGTCAGCGGCCGTTTCA--AT-----CT------GCTGGTCC---------------------------------------------------------------------------------TGGGAATTGCGCTAGGCGTTGCCCTATC----------GATGTATCC-----AGTAATTCGGCTTCGATCTCTCTGCCGCG---GCCATCACCGGAAAATCTAGGTCAGTGGCCCCGCCGGG---------------------------------------------------GTGGA--CCA--------TTATTTC--------GATCTGCGCCGACACGGTCCGCTCCGGTAATCGAAGGCTATGTGTTGGCCCGCGGAC
gi|27362320| TG---------------------------------------------GCG----CTGTGTTTTGGGCA------------tggcagagggttattgaagagttT----C----TC-GCCG--------------------------CTT----------------------------------------------------------------------------------------------------------------T------------------CGCAT----------G------------GTGATTGATGGCA------CCAATAAAGA-----CACGCCTAACGTG-----------AGGCCAAGCCACACCAATAATat-----------------------------------------------------------TGTAGCG--------GGTAACGTCTGTAGTGACC--------------------------------------
gi|17743906| TG---------------------------------------------CCA---ACCGCGTTTCAGGCA-----------------------------------T----T----TC-GCAT-----------------CATAGACCCCTGCA--AC-----AC------GCTTTTTG---------------------------------------------------------------------------------TGGGA------------------CTCTC----------GCGACCGCC-----CTTTGGTCTGCA------TCAATGCCGAA---GCCCGCGCCAGTTA-----------TGACCGCGCTGCGTCAGTGTTGGCGCAAAATCAGTGGTAGCTAAGGACGGCAGCAC-------GATTTCCTCCA-------CTTATGCA--------CGCCTCCGCCGGGCTGGTCG---CCAATCATCGAGGG--------TGAACACAGGTT
gi|15162260| TG---------------------------------------------CCA---ACCGCGTTTCAGGCA-----------------------------------T----T----TC-GCAT-----------------CATAGACCCCTGCA--AC-----AC------GCTTTTTG---------------------------------------------------------------------------------TGGGA------------------CTCTC----------GCGACCGCC-----CTTTGGTCTGCA------TCAATGCCGAA---GCCCGCGCCAGTTA-----------TGACCGCGCTGCGTCAGTGTTGGCGCAAAATCAGTGGTAGCTAAGGACGGCAGCAC-------GATTTCCTCCA-------CTTATGCA--------CGCCTCCGCCGGGCTGGTCG---CCAATCATCGAGGG--------TGAACACAGGTT
gi|24985412| cg-------CCCTTCCAGCACCGGC--GAAACAGCCCAGCCAGTTGCACG---TACAACGCCTGATCG-----------------------------------G----C----TC-GCCA--------------------------ATC----------------------------------------------------------------------------------------------------------------A------------------CGCCT----------GCAACGGCC-----CGg---------------TCAATACCGCGctgGCCCGGGCATAGT------------------CGCTGCGTGCCTGGCTGTTCAACGCCTG---CC-----GGTCCACAACGC-------CGTGGCCAGCCgaagatgCTGAAGCActgcacacGATGGCGCCGCCAGTGGCCA---ACAg-------------------GGCCAGCGACA
3300000000 00000000000000000000
There are some possible motif's identified by both programs. These don't look particularlly well conserved.
| Bacillus halodurans C-125 10173756 |
10173756 |
1236835..1237932 - 365 10173756 BH1140 - G COG1130 sugar ABC transportor (ATP-binding protein) |
| Bacillus subtilis complete genome - 0..4214814 2636416 |
2636416 |
3982925..3984022 - 365 2636416 msmX - G COG1130 multiple sugar-binding transport ATP-binding protein |
| Lactococcus lactis subsp. lactis IL1403 complete genome - 0..2365589 12723297 |
12723297 |
427883..429019 + 378 12723297 msmK L27865 G COG1130 multiple sugar ABC transporter ATP-binding protein |
| Listeria innocua Clip11262 16412733 |
16412733 |
317072..318172 - 366 16412733 lin0304 - - - similar to sugar ABC transporter, ATP-binding protein |
| Listeria monocytogenes strain EGD 16409643 |
16409643 |
300617..301717 - 366 16409643 lmo0278 - - - similar to sugar ABC transporter, ATP-binding protein |
| Oceanobacillus iheyensis 22776815 |
22776815 |
1185734..1186831 - 365 22776815 OB1134 - - - - |
| Streptococcus agalactiae NEM316 24413493 |
24413493 |
1984012..1985145 - 377 24413493 gbs1912 - - - Unknown |
| Streptococcus pneumoniae R6 complete genome - 0..2038615 15459092 |
15459092 |
1420581..1421711 - 376 15459092 msmK spr1437 - - ABC transporter ATP-binding protein - multiple sugar transport |
| Streptococcus pneumoniae complete genome - 0..2160837 14973071 |
14973071 |
1485130..1486260 - 376 14973071 SP1580 - G COG1130 sugar ABC transporter, ATP-binding protein |
| Streptococcus pyogenes MGAS315 21905445 |
21905445 |
1711292..1712425 - 377 21905445 msmK SpyM3_1696 - - putative multiple sugar-binding ABC transport system (ATP-binding protein) |
| Streptococcus pyogenes strain MGAS8232 19749123 |
19749123 |
1700719..1701852 - 377 19749123 - spyM18_2040 - - multiple sugar-binding ABC transport system (ATP-binding protein) |
| Streptococcus pyogenes strain SF370 serotype M1 13622991 |
13622991 |
1644602..1645735 - 377 13622991 msmK SPy1976 G COG1130 multiple sugar-binding ABC transport system (ATP-binding protein) |
| complete genome - 0..2160267 22534967 |
22534967 |
1909769..1910902 - 377 22534967 - SAG1925 - - - |
clustalw
gi|16412733|emb|CAC95537.1| -CTGTGAAGAAGGATTTATCACTGTAGATGAGTACCCGCGGCAGACCGAGCAACTGTTACTTACACCGCGACAGGAAAAGTAGAAGAAATCGAAGCGGGTGAAACAGATAAAGCATTAGAATATGAAATTACAGCAATGGAAGAAAGTATTGCAACTGGAGAAAATACAATCTATCAATTAACGAATGATGTTATCGCGATTATGAGTGATGTTAG-GTCGCAGTGGGGAATTAAATTTCCTTTTGAAAAAT-AAGAAAATCCCCGCCACACTTGGCGGGGATTTTTAAGTATA--------------------------------------------------------------------dialign
gi|16409643|emb|CAD00805.1| CTTGTGAAGAAGGATTTATCACTGTAGATGAATACCCGCGTGCCACCGAGCAACTGTTACACACACGGCAACTGGAAAAGTAGAAGAAATTGAGGTTGGCGAAACAAGTAAAGCTTTAGAATATGAAATTACAGCCATGGAAGAGAGCGTCGCGACAGGAGAAAACATGACTTATCAGTTAACAAATGATGTTATCGCGATTATGAGCGATGTTAG-AACGCAGTGGGGAATTAAATTTCCTTTTGAAAAAT-AAGAAAAACCC-GCCGAGCTTGGCGGGTTTTTCTACAAATA--------------------------------------------------------------------
gi|2636416|emb|CAB15907.1| ---------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAATCGTTTCATCGTTCTCC---TGCTTTCTGTCTATTTCTTCCTCCTTTTTC-ATCGT--TTGATTCTGAGATTTTCAATAGCAAAAA-ACCGGACATGTCTCCA----TGTCCGGTTTTTTTGATC-----------------------------------------------------------------------
gi|22776815|dbj|BAC13090.1| -----------------------------------------------------------------------------------------------------------------------------------------------------------TAATAAAATAAATGGCTAAAGGGAAGTCCAACAGGACTTCCCT--TTCTTTCTTATAT-AT-ATATTATTTTAGGCTTAGGTATTGGTTAAATC-----------------------------------------------------------------------------------------------------------------
gi|12723297|gb|AAK04519.1|AE00 -------------------------------------------------------------------------------------------TAATTAGCCCTCTTATCTCTAAAGATTCTGTCATTAATTGATAGAATCTTTTTTAGTTTGTAAGTGAAAAAATTACTGATAGGTCTTGTAAATAAAGGCTTTTCAACGATAATGTCAAAGATAATTGACACTAAGCAGCTTCAACTTTTCAGGCTTAAAAT-GCTAAAATTAACTTAGTCAAAATAATATTATTAGGAAAGCTCTCGTCTTTTTCGAT-----------------------------------------------------
gi|13622991|gb|AAK34663.1| -TGGACTTTGGTAAACAGGAGATAACCAAATGGCTGTAATGCCAAGTTTTTGCAAGTAGTCCAGTTGA-TGGTAATGCCTTTTAAATCACCAATACCATTGCCGCTGGTGTCTTTAAAGGACCTTGGGTAAATCTGATAAATCGTAGCTTTATGCCACCAGTGGTTGTTCATTATTCTTCTCCTATTAATCATTCATTCATCTTTTATTTTAACGTTTTTTCTCTTTTTGTGCAATCGTTTGCGCAAATAA--CATGATAAAAAGGC-TGGAACCCAACCTTTTTATGAATATCGCTTATACC-----------------------------------------------------------
gi|19749123|gb|AAL98515.1| -TGGACTTTGGTAAACAGGAG-TAACCAAATGGCTGTAATGCCAAGTTTTTGCAAGTAGTCCAGTTGACTGGTAATGCCTTTTAAATCACCAATACCATTGCCATTGGTGTCTTTAAAGGATCTCGGGTAAATCTGATAAATCGTAGCTTTATGCCACCAGTGTTTCTTCATTATTCTTCTCCTATTAATCATTCATTCATCTTTTATTTTAACGTTTTTTCTCTTTTTATGCAATCGTTTGCGCAAATGA--CATGATAAAAAGGC-TGGAACCCAACCTTTTTATGAATATCGCTTATACC-----------------------------------------------------------
gi|24413493|emb|CAD47571.1| -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATCTTTTATTTTAACGTTTTTCCTCTTT-AGTGCAAGCGTTTGCGTAAA-AA--CATTATAAAAAGGC-TGGAACCCAACCTTTTTATGAATATCGCTTATACC-----------------------------------------------------------
gi|22534967|gb|AAN00787.1|AE01 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA-CTTTTATTTTAACGTTTTTCCTCTTTTAGTGCAAGCGTTTGCGTAAA-AA--CATTATAAAAAGGC-TGGAACCCAACCTTTTTATGAATATCGCTTATACC-----------------------------------------------------------
gi|21905445|gb|AAM80303.1| -GGGCGACTGGTAAACAG-AGATAACCAAATGGCTGTAATGCCAAGTTTTTGCAAGTAGTCCAGTTGACTGGTAATGCCTTTTAAATCACCAATACCATTGCCATTGGTGTCTTTAAAGGATCTTGGGTAAATCTGATAAATCGTAGCTTTATGCCACCAGTGTTTCTTCATTATTCTTCTCCTATTAATCATTCATTCATCTTTTATTTTAACGTTTTTTCTCTTTTTATGCAATCGTTTGCGCAAATGA--CATGATAAAAAGGT-TGGAACCCAACCTTTTTATCAATATCGCTTATACC-----------------------------------------------------------
gi|14973071|gb|AAK75666.1| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAGAGAAGCATTTT---GTTTCTTCCCTAGATTAACTGATATCTCTCCACTACA--ATTGATAAAGAGATATCTTTTCTTGTAGTGCTTTGAATTTTATTTATT-------------------------------------------------------------
gi|10173756|dbj|BAB04859.1| -------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATGCTCG-CGACCATCGATGCGC---CCATGTTCTTGTCTGTCCCCGTTGTCAAATACCTCTGTTTATCTTATCGATGAACAGTAAAACAGCCACCT-TGATATG-AGGGCAAGATGGCTGTT---TGGTTTAC--------------------------------------------------------------------
gi|15459092|gb|AAL00241.1| ----------ACAATTCTAATCTATTATTTGATAAACTAGATCAAAAGCATACAAGTCACCATAACTATAGCATAAATTTATTATTACCTCTCTAGTTCGAATTCAATTGCTCACGTAGTTTACGCATATAGCTTCACTTGTAGATGGTACCCACAAATAATACTCAATGGAAATCAAAGAGCAAACTAGGAAACTAGCCGTAAGCTGCTCAAAGTACAGCT-TTGAGGTTGCAGATAAA-ACTGACGAAGTCAGTAATCATACGTACGGCAAGGCGACGTTGACGTGGTTTGAAGAGATTTTCGAAGAGTATTAAAGAGCATCACAATATAGATGCATAATATGACTTCCCTAGCAAAAAG
gi|13622991| ------------TGGACTTTGGTAAACAGGAGATAACCAATGCCAAGTTTTTGCAAGTAGTCCAGTTGA-TGGTAATGCCC-CAATACCATTGC--------CGCTGGTGTCTTTAAAGGAATCTGATAAATCGTAGCTTTATGCCACCAGTGGTTGTTCTCCTATTAATCATT-----------CATTCATCTTTTATTTTCTCTTTTTGTGCAATCGTT----------------------------TGC-------------GCAAATA----ACATCTGGAACCCA----------------------------------------------------ACCTTTTTATGAATATCG------------------------------------------------------------------------------------------------------------------------
gi|2636416|e -----------------------------------------------------------------------------------AAAACAATCGT---------------------------------------------------------------TTCTGCTTTCTGTCTATttcttcctcctTTTTCATCGTTTGATTC------------------------------------------------------------------------------CAAAAAACCG----------------------------------------------------GACATGTCTCCATGTCCG------------------------------------------------------------------------------------------TC----------------------------
gi|10173756| --------------------AGAATGCTCGCGACCATCGA--CCATGTTCTTGTCTGTc--CCCGTTGTCAAATACCTCTT-CGATG--------------------------------------------------------------------------------------------------------------------------------AACAGT----------------------------AAA-------------ACAGCCA----CCTTCAAGATGGCT----------------------------------------------------GTTTGGTTTAC-------------------------------------------------------------------------------------------------------------------------------
gi|22776815| t-----------------------------AATAAAATAA---------------GGAAGTCCA----ACAGGACTTCCCTTC------------------------------------------------------------------------------------------T-----------TATATATATATTATT--------------------------------------------------------------------------------CT---------------------------------------------------------------------TAGGTATTG------------------------------------------------------------------------------------------------------------------------
gi|21905445| g------------GGCGACTGGTAAACA-GAGATAACCAATGCCAAGTTTTTGCAAGTAGTCCAGTTGACTGGTAATGCCC-CAATACCATTGC--------CATTGGTGTCTTTAAAGGAATCTGATAAATCGTAGCTTTATGCCACCAGTGTTTCTTCTCCTATTAATCATT-----------CATTCATCTTTTATTTTCTCTTTTTATGCAATCGTT----------------------------TGC-------------GCAAATG----ACATTTGGAACCCA----------------------------------------------------ACCTTTTTATCAATATCG------------------------------------------------------------------------------------------------------------------------
gi|19749123| ------------TGGACTTTGGTAAACAGGAG-TAACCAATGCCAAGTTTTTGCAAGTAGTCCAGTTGACTGGTAATGCCC-CAATACCATTGC--------CATTGGTGTCTTTAAAGGAATCTGATAAATCGTAGCTTTATGCCACCAGTGTTTCTTCTCCTATTAATCATT-----------CATTCATCTTTTATTTTCTCTTTTTATGCAATCGTT----------------------------TGC-------------GCAAATG----ACATCTGGAACCCA----------------------------------------------------ACCTTTTTATGAATATCG------------------------------------------------------------------------------------------------------------------------
gi|24413493| --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATCTTTTATTTCCTCTTT-AGTGCAAGCGTT----------------------------TGC-------------GTAAA-A----ACATCTGGAACCCA----------------------------------------------------ACCTTTTTATGAATATCG------------------------------------------------------------------------------------------------------------------------
gi|22534967| --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA-CTTTTATTTCCTCTTTTAGTGCAAGCGTT----------------------------TGC-------------GT-AAAA----ACATCTGGAACCCA----------------------------------------------------ACCTTTTTATGAATATCG------------------------------------------------------------------------------------------------------------------------
gi|12723297| ----------------------------------------AGCCCTCTTATCTCTAAAGATTCTGT---CATTAATTGATT-TAGTTTGTAAGTgaaaaaatTACTGATAG-------------------------------------------------------------------------------GTCTTGTAAATCAACGAT-AATGTCAAAGATaattgacactaagcagcttggcttaaaaTGCtaaaattaacttaGT-CAAA----ATAAAAAGCTCTCG----------------------------------------------------TCTTTTT---------CG------------------------------------------------------------------------------------------------------------------------
gi|15459092| acaattctaatcTATTATTTGATAAACTAGAT-CAAAAGCCCA--------------TAACTATAG---CATAAATTTATC-TAGTTCGAATTC--------AATTGCTCACG-------------------------------------------------------------------------------------------------------TAGTT----------------------------TAC-------------GCATA-T----AGCTATGGTACCCAcaaataatactcaatggaaatcaaagagcactagccgtaagctgctcaaagtACAGCTTTGAGGTTGCAGcgaagtcagtaatcatacgtacggcaaggcGACGTTGACGAGATTTTCGAA-------GAGTATTAAAGAGCATcacaatAATATGACTTCCCTAGCAAAAag-----------------
gi|14973071| a------------------GGAGAGAAGCATT-T-----------------------TGTTTCTTC---CCTAGATTAACC-CACTACAATTGA--------TAAAGAGAT-------------------------------------------------------------------------------ATCTTTTCTTGAATTTTATT-------------------------------------------------------------------------------------------------------------------------------------------------TATT-------------------------------------------------------------------------------------------------------------------------
gi|16412733| c-----------------TGTGAAGAAGGATT-TATCACTACCCGCG-----------------GCAGACCGAGCAACTGTACACCGCGACAGG--------AAAAGTAGAAGAAATCGAAAACAGATAAAGCATTAGAATATGAAATT--------------------------------------------------------------------------------------------------------------------ACAGCAATGGAAGAACTGGAGAAAA----------------------------------------------------TACAATCTATCAATTAAC------------------------------GATGTTATCGTGATGTTAGgtCGCAGTGGGGAATTAAATTTCCTTT----AATAAGAAAATCCCCGCCACACTTGGCGGGGATTTTTAAG
gi|16409643| ----------------CTTGTGAAGAAGGATT-TATCACTACCCGCG-------------TGCC----ACCGAGCAACTGCACACGGCAACTGG--------AAAAGTAGAAGAAATTGAAAACAAGTAAAGCTTTAGAATATGAAATT--------------------------------------------------------------------------------------------------------------------ACAGCCATGGAAGAGCAGGAGAAAA----------------------------------------------------CATGACTTATCAGTTAAC------------------------------GATGTTATCGCGATGTTAGAACGCAGTGGGGAATTAAATTTCCTTT----AATAAGAAAAa-CCCGCCGAGCTTGGCGGGTTTTTCTACA
0000000000 1111111111110222222200888888877767676666000000000000000000000000000000000000000000000000000000000000