>durbin fig 3.5 315116246446644245311321631164152133625144543631656626566666 651166453132651245636664631636663162326455236266666625151631 222555441666566563564324364131513465146353411126414626253356 366163666466232534413661661163252562462255265252266435353336 233121625364414432335163243633665562466662632666612355245242 > If you are interested in a (partial) "gold standard", > the data in this file corresponds to figure 3.5 in Durbin, et al. > Above are the 300 dice rolls. Below is information from Durbin as > to whether the fair or loaded die was used for each roll, followed > by the Viterbi path. The "posterior" line below is the output > of *my* implementation of posterior decoding, 1 <-> prob > 0.5 > Note that it may be buggy... (I typed in the rest of that data by > hand, so it may be buggy too...) > > If you don't want to generalize your code to handle a 6 letter alphabet, > you could replace 1-5 by A and 6 by C, then use your DNA hmm. > > Rolls 315116246446644245311321631164152133625144543631656626566666 > Die FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLLLLLLLLLLLLLLL > Viterbi FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLLLLLLLLLLLL > posterior 000000000000000000000000000000000000000000000001111111111111 > > Rolls 651166453132651245636664631636663162326455236266666625151631 > Die LLLLLLFFFFFFFFFFFFLLLLLLLLLLLLLLLLFFFLLLLLLLLLLLLLLFFFFFFFFF > Viterbi LLLLLLFFFFFFFFFFFFLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFFFFFFFF > posterior 111111000000000000111111111111111110000000001111111100000000 > > Rolls 222555441666566563564324364131513465146353411126414626253356 > Die FFFFFFFFLLLLLLLLLLLLLFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLL > Viterbi FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFL > posterior 000000000111111111000000000000000000000000000000000000000001 > > Rolls 366163666466232534413661661163252562462255265252266435353336 > Die LLLLLLLLFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF > Viterbi LLLLLLLLLLLLFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF > posterior 111111111111000000000111111000000000000000000000000000000000 > > Rolls 233121625364414432335163243633665562466662632666612355245242 > Die FFFFFFFFFFFFFFFFFFFFFFFFFFFLLLLLLLLLLLLLLLLLLLLLLFFFFFFFFFFF > Viterbi FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLLLLLLLLLLLLLLLLLLLFFFFFFFFFFF > posterior 000000000000000000000000000001111111111111111111100000000000