Mediated Schema
OMIM
Swiss-
Prot
HUGO
GO
Gene-
Clinics
Entrez
Locus-
Link
GEO
Entity
Sequenceable Entity
Gene
Phenotype
Structured Vocabulary
Experiment
Protein
Nucleotide Sequence
Microarray Experiment
Query: For the micro-array experiment I just ran, what are the related nucleotide sequences and for what protein do they code?
www.biomediator.org
Tarczy-Hornoch, Mork
Shown query is courtesy of Hao Mei.
For all phenotypes in one database, find all gene, locus, product triples (GeneTests’ curator query).
For a given genetic disease, find all other diseases caused by the same gene (Joyce Mitchell, National Library of Medicine).
For a set of genes and proteins, find all matches (Marianne Barrier).
For some gene, find all homologues in other species (me).

Notes: Phenotype can be normal (as depicted) or abnormal (gross).  Gene is misrepresented as a more concrete chromosome.  Vocabulary picture stolen from Unified Medical Language System.