Recovering the Matchings
Q = AGTA
T = AGATCGTAGT
0
0
0
0
0
0
0
0
0
1 A
2 G
3 T
4 A
-1
2
1
2
1
0
-1
-1
-2
1
4
3
2
1
2
1
-3
0
3
3
5
4
3
4
-4
-1
2
5
4
4
3
3
0 1 2 3 4 5 6 7 8 9 10
A G A T C G T A G T
0
0
0
2
1
0
1
4
3
3
3
6
6
5
5
Q AGTA
T AG-A 1-3
Q A--GTA
T ATCGTA 3-8
Q A--GTA-
T ATCGTAG 3-9
Q AGTA
T AGT- 8-10
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