CSE591C: Comp Bio Group Meeting

Tuesdays, 2:30-3:20, CSE 674 (the Irish room).

Tentative Schedule:

1/12  Martin/Xiaoyu - ENCODE alignment update
1/19  All - NAR database issue (Nucl. Acids Res. 2010 38):

    Ruzzo 
        deepBase: a database for deeply annotating and mining deep sequencing data 

    Kavita
        TransmiR: a transcription factor-microRNA regulation database

    Benjamin
        The UniProt Consortium: The Universal Protein Resource (UniProt) in 2010

    Elizabeth
        COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer 

    Xiaoyu
        ENCODE whole-genome data in the UCSC Genome Browser

    Daniel
        Recode-2: new design, new search tools, and many more genes 

    Martin
        The comprehensive microbial resource.  PMID: 19892825

1/26  tba
2/2   Michal Linial - TBA
2/9   Shane Neph - motif discovery in large data sets 
2/16  Daniel - RNAseq
2/23  Elizabeth - metagenomics
3/2   Elizabeth and/or Martin - ECE's?
3/9   Su-In

possible: updates from Elizabeth, Kavita, Benjamin; Larry on ChIPseq; Su-In on her latest