| Course Info |
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CSE 590C is a weekly seminar on Readings and Research in
Computational Biology, open to all graduate students in computational,
biological, and mathematical sciences.
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| Papers, etc. |
Note on Electronic Access to Journals
Links to full papers below are often to journals that require a
paid subscription. The UW Library is generally a paid
subscriber, and you can freely access these articles if you do
so from an on-campus computer. For off-campus access,
follow the "[offcampus]" links below or
look at the
library "proxy server" instructions.
You will be prompted for your UW net ID and password once per
session.
01/09: ---- Organizational Meeting ----
01/16: -- Holiday
01/23: Evolutionary Trajectories in Fitness Landscapes -- C.Miles; Joe
01/30: Gene Transfer in Microbiomes -- Elizabeth; Elhanan
And/or:
02/06: cis-Regulatory Modules and Enhancers -- John; Bill & Larry
02/13: Selection For Overlapping Functions -- Evan, Daniel; Martin
- MF Lin, P Kheradpour, S Washietl, BJ Parker, JS Pedersen, M Kellis, "Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes." Genome Res., 21, #11 (2011) 1916-28.
[offcampus]
02/20: -- Holiday
02/27: Parallel de Bruijn Assembly -- Ezgi; Larry
03/05: Non-unique read mapping in ChIPseq for TFBS discovery -- Max; Bill
- D Chung, PF Kuan, B Li, R Sanalkumar, K Liang, EH Bresnick, C Dewey, S Keleş, "Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data." PLoS Comput. Biol., 7, #7 (2011) e1002111.
[offcampus]
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