| Course Info |
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CSE 590C is a weekly seminar on Readings and Research in
Computational Biology, open to all graduate students in computational,
biological, and mathematical sciences.
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| Papers, etc. |
Note on Electronic Access to Journals
Links to full papers below are often to journals that require a
paid subscription. The UW Library is generally a paid
subscriber, and you can freely access these articles if you do
so from an on-campus computer. For off-campus access,
follow the "[offcampus]" links below or
look at the
library "proxy server" instructions.
You will be prompted for your UW net ID and password once per
session.
01/08: ---- Organizational Meeting ----
01/15: -- Holiday
01/22: Covariation in RNA Alignments -- Elaine, Rosalia; Ruzzo
01/29: Protein Knot Polynomials -- Josh, Pascal; Felsenstein
which improves on the classic paper:
02/05: Functional Linkage From Correlated Gene Loss -- James, Nguyen; Felsensetein
02/12: cis-Regulatory Modules from CHIP2 -- Dan, Imran; Noble
- VX Jin, A Rabinovich, SL Squazzo, R Green, PJ Farnham, "A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--a case study using E2F1." Genome Res., 16, #12 (2006) 1585-95.
[offcampus]
02/19: -- Holiday
02/26: Ancestral Genomes -- Adrienne, Zizhen; Tompa
- J Ma, L Zhang, BB Suh, BJ Raney, RC Burhans, WJ Kent, M Blanchette, D Haussler, W Miller, "Reconstructing contiguous regions of an ancestral genome." Genome Res., 16, #12 (2006) 1557-65.
[offcampus]
Plus the accompanying Commentary:
03/05: RNA Homology Search -- Ben, Elizabeth; Ruzzo
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