CSE/EE 577: Medical Image Analysis Autumn 2021 MW 1:00-2:20, Room ECE 045 FINAL REPORTS DAY: Monday Dec 13, 2:30-4:20

Instructor: Linda Shapiro
Class Zoom Link: https://washington.zoom.us/j/94472595899
Office: 634 Allen Center, Phone: 206-543-2196, Email: shapiro@cs.washington.edu, Office Hours: W 3:00-4:00, starting Oct. 6

Teaching Assistant and Grader

• Beibin Li, TA (beibin@cs.washington.edu)
  Office Hours: Wednesday, 11:00- 11:59 AM; https://washington.zoom.us/j/4473407326
• Sadjyot Gangolli, Grader (sadjyotg@uw.edu)
  Office Hours : TBD

Notes and Assignments

• Notes
  
• Assignments
  

Class Mailing List

• All emails related to the class are sent through the class mailing list: multi_cse577a_au21@uw.edu. This is mainly for US to send emails to YOU.

Course Canvas:

• Canvas Home Page

Discussion Board

• All discussion about the class and its assignments will be through the Discussion Board which is at this link
  

Homework Submission Guidelines and Rubrics

• This class will consist of 3 Homework Assignments and 1 Final Course Project. The first assignment will not be graded and hence need not be turned in. The next two assignments would be graded and will be needed to be turned in before the due date.
• The final course project should be comprehensive enough so that combination of topics touched upon in class are applied while implementing it.
• Late submissions will be graded with a 10% decrease in grade each day, until the 3rd day after due date. Post the 3rd day, submissions won't be accepted, and the lowest grades will be assigned.
• Doubts and questions regarding the assignments and topics taught in class can be posted in the discussion forums or one can attend the Office Hours held by our TA or Grader via Zoom.
• Collaboration is encouraged for understanding topics taught in class, however, individual copy of work is needed to be submitted for Homework Assignments and Project.

Related Text

• Shapiro and Stockman, Computer Vision, Prentice-Hall, 2001. Original chapters available at this URL
• Dhawan, Medical Image Analysis, IEEE Press, 2011. You can access this book online through UW Libraries (on a UW computer or logged in with your UW Netid); they have electronic copies.

Course Details

• Topics (including hardware, reconstruction, applications, and algorithms):
  • Introduction to Medical Imaging Modalities and Applications
  • Low-level Operations for Processing and Enhancement
  • Mid-level Operations
  • CT Imaging
  • PET/CT Registration
  • Brain Imaging
    • MRI
    • fMRI
    • DTI
  • Machine Learning
  • Ultrasound Imaging
  • 3D from Multi-Camera Stereo for Craniofacial Application
  • Cancer Biopsy Processing

• Evaluation: Python programs and Course Project
• COVID Protocols: Everyone is required to wear a mask while indoors. I may remove my mask while lecturing, but you will be required to wear a mask throughout the class. Eating and drinking are therefore prohibited in the classroom, although quick sips of water are permitted. Any student who refuses to wear a mask will be asked to leave the classroom. Students who refuse to comply with these requests and policies will be referred to the Community Standards and Student Conduct Office for possible disciplinary action. In general, I expect you to comply with the UW Covid Protocols. here.