CSE 427: Homework

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Homework: Homework 0: Specification Homework 1: Specification, Results Homework 2: Specification, Results, Multiple alignment of human and top 7 matches, Multiple alignment of all 17 prokaryote matches, Homework 3: Specification, Results Homework 4: Specification 1/3 Reading Assignment: Basics of Molecular Biology (class handout) Molecular Biology for Computer Scientists, a primer by Lawrence Hunter 1/5 Reading Assignment: Pairwise sequence alignment: Lectures 3-5 from CSE 527 1/18 Reading Assignment: Overview of the BLAST Algorithm 1/21 Reading Assignment: BLAST statistics: Stephen Altschul's primer Sections 6.5.1-6.5.2 from Ewens and Grant's book. 1/25 Reading Assignment: Multiple Sequence Alignment: Sections 6.1-6.4 from CSE 527 Overview of progressive alignment 2/1 Reading Assignment: Algorithms for Locating Extremely Conserved Elements in Multiple Sequence Alignments 2/3 Reading Assignment: Section on phylogenetic trees in Lecture 4 from Michael Brudno's lecture notes 2/8 Reading Assignment: Lecture notes on Markov models 2/15 Reading Assignment: Lecture notes on profile HMMs 2/22 Reading Assignment: Motif discovery for predicting regulatory elements

	Computer Science & Engineering University of Washington Box 352350 Seattle, WA  98195-2350 (206) 543-1695 voice, (206) 543-2969 FAX [comments to cse427-owner]