CSE 427: Homework

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Homework: #0: Specification #1: Specification, Results #2: Specification, Results, Multiple alignment of 14 best matches, Multiple alignment of 8 best matches #3: Specification, Histograms, Longest ultraconserved region, 90% identical across all 44 species #4: Specification 1/6 Reading Assignment: Basics of Molecular Biology (class handout) Molecular Biology for Computer Scientists, a primer by Lawrence Hunter 1/8 Reading Assignment: Pairwise sequence alignment: Lectures 3-5 from CSE 527 1/20 Reading Assignment: BLAST statistics: Stephen Altschul's primer. 1/22 Reading Assignment: Sections 6.5.1-6.5.2 from Ewens and Grant's book. 1/27 Reading Assignment: Multiple Sequence Alignment: Sections 6.1-6.4 from CSE 527 2/5 Reading Assignment: Section on phylogenetic trees in Lecture 4 from Michael Brudno's lecture notes

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