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  CSE P590ASu '06:  Computational Biology (Professional Masters Program)
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Lecture Notes
 1: Introduction; Bio Basics (1-up4-up)
 2: Alignment; DNA Replication (1-up4-up)
 3: BLAST & Scoring; DNA Sequencing (1-up4-up)
 4: MLE & EM; Gene Expression (1-up4-upnotes )
 5: Motifs; Gene Regulation (1-up4-up)
 6: HMMs; Chromatin (1-up4-up)
 7: Gene Finding; Splicing (1-up4-up)
 8: RNA Folding; RNA Function (1-up4-up)
 9: RNA Search; Wrap-up (1-up4-up)
 NCBI Science Primer
 NHGRI Talking Glossary
 ORNL Genome Glossary
 A Molecular Biology Glossary

Lecture:  EEB 037 (schematic) Th 6:30- 9:20PM
Office Hours Phone
Instructor:  Larry Ruzzo, ruzzo at cs  By appt. CSE 554  (206) 543-6298
TA:  Jenny Liu, jen@cs  By appt.

Course Email: Use this list to ask and/or answer questions about homework, lectures, etc. The instructor and TA are subscribed to this list. All messages are automatically archived.  Questions not of general interest may be directed to the instructor and TA: csep590a-staff or just to the instructor: ruzzo@cs. You can (and perhaps should) change your subscription options.

Catalog Description: An introduction to the use of computational methods for the understanding of biological systems at the molecular level.

Prerequisite: None.

Credits: 4

Textbook: Richard Durbin, Sean R. Eddy, Anders Krogh and Graeme Mitchison, Biological Sequence Analysis: Probabilistic models of proteins and nucleic acids, Cambridge, 1998. (U. Book Store, Amazon) Errata.

References: See Schedule.

Portions of the CSE P590A Web may be reprinted or adapted for academic nonprofit purposes, providing the source is accurately quoted and duly credited. The CSE P590A Web: © 1993-2006, Department of Computer Science and Engineering, University of Washington.

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