15:59:43 From David Koelle to Walter L Ruzzo(Direct Message) : Optional at end.  Have you played with TCRdist3 (from FHCRC), GLYPH (from Stanford), etc. to hunt out motif-similar TCR VDR3?
16:00:14 From David Koelle to Walter L Ruzzo(Direct Message) : CDR3 no VDR3!
16:17:53 From David Koelle to Walter L Ruzzo(Direct Message) : MAIT cool: low hanging fruit and actually expected: the algorithm SHOULD have found this and it did!  Maybe you will show it do you have a demonstration of principle for CMV?
16:19:12 From David Koelle to Everyone : demonstration of principle for flu: great!  What about CMV?
16:27:19 From Rachel Hin Ying Ng to Everyone : How does this algorithm compare with GLIPH analysis?
16:29:05 From Neil F Abernethy to Everyone : It might be interesting to look for correlation of TCR data with gene expression from those receptor genes and their known interactors (as a subset of all gene expression)
16:30:41 From Neil F Abernethy to Everyone : Sorry my mic is down