| Papers, etc. |
Note on Electronic Access to Journals
Links to full papers below are often to journals that require a
paid subscription. The UW Library is generally a paid
subscriber, and you can freely access these articles if you do
so from an on-campus computer. For off-campus access,
follow the "[offcampus]" links below or
look at the
library "proxy server" instructions.
You will be prompted for your UW net ID and password once per
session.
01/07: ---- Organizational Meeting ----
01/14: Fly ncRNA -- Elaine, Zizhen (Larry)
Mainly - D Rose, J Hackermueller, S Washietl, K Reiche, J Hertel, S Findeiss, PF Stadler, SJ Prohaska, "Computational RNomics of Drosophilids." BMC Genomics, 8, #1 (2007) 406.
[offcampus]
plus a some snippets from
- Drosophila 12 Genomes Consortium: AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, TC Kaufman, M Kellis, W Gelbart, VN Iyer, DA Pollard, TB Sackton, AM Larracuente, ND Singh, JP Abad, DN Abt, B Adryan, M Aguade, H Akashi, WW Anderson, CF Aquadro, DH Ardell, R Arguello, CG Artieri, DA Barbash, D Barker, P Barsanti, P Batterham, S Batzoglou, D Begun, A Bhutkar, E Blanco, SA Bosak, RK Bradley, AD Brand, MR Brent, AN Brooks, RH Brown, RK Butlin, C Caggese, BR Calvi, A Bernardo de Carvalho, A Caspi, S Castrezana, SE Celniker, JL Chang, C Chapple, S Chatterji, A Chinwalla, A Civetta, SW Clifton, JM Comeron, JC Costello, JA Coyne, J Daub, RG David, AL Delcher, K Delehaunty, CB Do, H Ebling, K Edwards, T Eickbush, JD Evans, A Filipski, S Findeiss, E Freyhult, L Fulton, R Fulton, AC Garcia, A Gardiner, DA Garfield, BE Garvin, G Gibson, D Gilbert, S Gnerre, J Godfrey, R Good, V Gotea, B Gravely, AJ Greenberg, S Griffiths-Jones, S Gross, R Guigo, EA Gustafson, W Haerty, MW Hahn, DL Halligan, AL Halpern, GM Halter, MV Han, A Heger, L Hillier, AS Hinrichs, I Holmes, RA Hoskins, MJ Hubisz, D Hultmark, MA Huntley, DB Jaffe, S Jagadeeshan, WR Jeck, J Johnson, CD Jones, WC Jordan, GH Karpen, E Kataoka, PD Keightley, P Kheradpour, EF Kirkness, LB Koerich, K Kristiansen, D Kudrna, RJ Kulathinal, S Kumar, R Kwok, E Lander, CH Langley, R Lapoint, BP Lazzaro, SJ Lee, L Levesque, R Li, CF Lin, MF Lin, K Lindblad-Toh, A Llopart, M Long, L Low, E Lozovsky, J Lu, M Luo, CA Machado, W Makalowski, M Marzo, M Matsuda, L Matzkin, B McAllister, CS McBride, B McKernan, K McKernan, M Mendez-Lago, P Minx, MU Mollenhauer, K Montooth, SM Mount, X Mu, E Myers, B Negre, S Newfeld, R Nielsen, MA Noor, P O'Grady, L Pachter, M Papaceit, MJ Parisi, M Parisi, L Parts, JS Pedersen, G Pesole, AM Phillippy, CP Ponting, M Pop, D Porcelli, JR Powell, S Prohaska, K Pruitt, M Puig, H Quesneville, KR Ram, D Rand, MD Rasmussen, LK Reed, R Reenan, A Reily, KA Remington, TT Rieger, MG Ritchie, C Robin, YH Rogers, C Rohde, J Rozas, MJ Rubenfield, A Ruiz, S Russo, SL Salzberg, A Sanchez-Gracia, DJ Saranga, H Sato, SW Schaeffer, MC Schatz, T Schlenke, R Schwartz, C Segarra, RS Singh, L Sirot, M Sirota, NB Sisneros, CD Smith, TF Smith, J Spieth, DE Stage, A Stark, W Stephan, RL Strausberg, S Strempel, D Sturgill, G Sutton, GG Sutton, W Tao, S Teichmann, YN Tobari, Y Tomimura, JM Tsolas, VL Valente, E Venter, JC Venter, S Vicario, FG Vieira, AJ Vilella, A Villasante, B Walenz, J Wang, M Wasserman, T Watts, D Wilson, RK Wilson, RA Wing, MF Wolfner, A Wong, GK Wong, CI Wu, G Wu, D Yamamoto, HP Yang, SP Yang, JA Yorke, K Yoshida, E Zdobnov, P Zhang, Y Zhang, AV Zimin, J Baldwin, A Abdouelleil, J Abdulkadir, A Abebe, B Abera, J Abreu, SC Acer, L Aftuck, A Alexander, P An, E Anderson, S Anderson, H Arachi, M Azer, P Bachantsang, A Barry, T Bayul, A Berlin, D Bessette, T Bloom, J Blye, L Boguslavskiy, C Bonnet, B Boukhgalter, I Bourzgui, A Brown, P Cahill, S Channer, Y Cheshatsang, L Chuda, M Citroen, A Collymore, P Cooke, M Costello, K D'Aco, R Daza, G De Haan, S DeGray, C DeMaso, N Dhargay, K Dooley, E Dooley, M Doricent, P Dorje, K Dorjee, A Dupes, R Elong, J Falk, A Farina, S Faro, D Ferguson, S Fisher, CD Foley, A Franke, D Friedrich, L Gadbois, G Gearin, CR Gearin, G Giannoukos, T Goode, J Graham, E Grandbois, S Grewal, K Gyaltsen, N Hafez, B Hagos, J Hall, C Henson, A Hollinger, T Honan, MD Huard, L Hughes, B Hurhula, ME Husby, A Kamat, B Kanga, S Kashin, D Khazanovich, P Kisner, K Lance, M Lara, W Lee, N Lennon, F Letendre, R LeVine, A Lipovsky, X Liu, J Liu, S Liu, T Lokyitsang, Y Lokyitsang, R Lubonja, A Lui, P MacDonald, V Magnisalis, K Maru, C Matthews, W McCusker, S McDonough, T Mehta, J Meldrim, L Meneus, O Mihai, A Mihalev, T Mihova, R Mittelman, V Mlenga, A Montmayeur, L Mulrain, A Navidi, J Naylor, T Negash, T Nguyen, N Nguyen, R Nicol, C Norbu, N Norbu, N Novod, B O'Neill, S Osman, E Markiewicz, OL Oyono, C Patti, P Phunkhang, F Pierre, M Priest, S Raghuraman, F Rege, R Reyes, C Rise, P Rogov, K Ross, E Ryan, S Settipalli, T Shea, N Sherpa, L Shi, D Shih, T Sparrow, J Spaulding, J Stalker, N Stange-Thomann, S Stavropoulos, C Stone, C Strader, S Tesfaye, T Thomson, Y Thoulutsang, D Thoulutsang, K Topham, I Topping, T Tsamla, H Vassiliev, A Vo, T Wangchuk, T Wangdi, M Weiand, J Wilkinson, A Wilson, S Yadav, G Young, Q Yu, L Zembek, D Zhong, A Zimmer, Z Zwirko, DB Jaffe, P Alvarez, W Brockman, J Butler, C Chin, S Gnerre, M Grabherr, M Kleber, E Mauceli, I MacCallum, "Evolution of genes and genomes on the Drosophila phylogeny." Nature, 450, #7167 (2007) 203-18.
[offcampus]
- A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, MA Crosby, MD Rasmussen, S Roy, AN Deoras, JG Ruby, J Brennecke, Harvard FlyBase curators: Berkeley Drosophila Genome Project: E Hodges, AS Hinrichs, A Caspi, B Paten, SW Park, MV Han, ML Maeder, BJ Polansky, BE Robson, S Aerts, J van Helden, B Hassan, DG Gilbert, DA Eastman, M Rice, M Weir, MW Hahn, Y Park, CN Dewey, L Pachter, WJ Kent, D Haussler, EC Lai, DP Bartel, GJ Hannon, TC Kaufman, MB Eisen, AG Clark, D Smith, SE Celniker, WM Gelbart, M Kellis, "Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures." Nature, 450, #7167 (2007) 219-32.
[offcampus]
01/21: Holiday
01/28: Uncertainty in homology inference -- Benjamin, Field (Larry)
- G Lunter, A Rocco, N Mimouni, A Heger, A Caldeira, J Hein, "Uncertainty in homology inferences: Assessing and improving genomic sequence alignment." Genome Res, (2007) .
[offcampus]
02/04: Periodic SNPs -- Shyamala (Bill)
02/11: Are There Rearrangement Hotspots? -- Punya, Jessica (Joe)
02/18: Holiday
02/25: Transcription Initiation Code -- Adrienne, Xiaoyu (Bill)
03/10: Metabolic Flux Balance -- Elizabeth (Harlan)
We'll do the first paper below; the rest are for
anyone interested in more.
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