| Papers, etc. |
Note on Electronic Access to Journals
Links to full papers below are often to journals that require a
paid subscription. The UW Library is generally a paid
subscriber, and you can freely access these articles if you do
so from an on-campus computer. For off-campus access,
follow the "[offcampus]" links below or
look at the
library "proxy server" instructions.
You will be prompted for your UW net ID and password once per
session.
10/02: ---- Organizational Meeting ----
10/09: The Microbial Pan-Genome -- Elizabeth T; Tompa
- H Tettelin, V Masignani, MJ Cieslewicz, C Donati, D Medini, NL Ward, SV Angiuoli, J Crabtree, AL Jones, AS Durkin, RT Deboy, TM Davidsen, M Mora, M Scarselli, I Margarit y Ros, JD Peterson, CR Hauser, JP Sundaram, WC Nelson, R Madupu, LM Brinkac, RJ Dodson, MJ Rosovitz, SA Sullivan, SC Daugherty, DH Haft, J Selengut, ML Gwinn, L Zhou, N Zafar, H Khouri, D Radune, G Dimitrov, K Watkins, KJ O'Connor, S Smith, TR Utterback, O White, CE Rubens, G Grandi, LC Madoff, DL Kasper, JL Telford, MR Wessels, R Rappuoli, CM Fraser, "Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"." Proc. Natl. Acad. Sci. U.S.A., 102, #39 (2005) 13950-5.
[offcampus]
10/16: Nucleosome Positioning -- Dan B, Adrienne W; Tompa
- E Segal, Y Fondufe-Mittendorf, L Chen, A Thåström, Y Field, IK Moore, JP Wang, J Widom, "A genomic code for nucleosome positioning." Nature, 442, #7104 (2006) 772-8.
[offcampus]
10/23: Network Multiple Alignment -- James T, Pascal C; Noble
10/30: Fast multiple sequence alignment? -- Dan H; Felsenstein
11/06: An RNA Gene in Human Brain -- Becky D, Kasia W; Ruzzo
- KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, S Katzman, B King, C Onodera, A Siepel, AD Kern, C Dehay, H Igel, M Ares, P Vanderhaeghen, D Haussler, "An RNA gene expressed during cortical development evolved rapidly in humans." Nature, 443, #7108 (2006) 167-72.
[offcampus]
Their companion paper - KS Pollard, SR Salama, B King, AD Kern, T Dreszer, S Katzman, A Siepel, JS Pedersen, G Bejerano, R Baertsch, KR Rosenbloom, J Kent, D Haussler, "Forces Shaping the Fastest Evolving Regions in the Human Genome." PLoS Genet, 2, #10 (2006) .
[offcampus]
has more details about methods and general discussion of the other accelerated regions found.11/13: Sampling Protein Conformations -- Zizhen Y, Elaine C; Noble
11/20: RNA 2ary Structure & Sequence Motifs -- Nguyen N, Imran R; Ruzzo
11/27: Comparative Exon Detection -- Cristina G, Jonathan C; Felsenstein
12/04: Gene Regulation in T. pallidum -- Arturo Centurion, UW Dept. of Medicine
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